我一直在使用Potit的软件包管理器进行二进制安装程序包，这对大多数事情都有效。但是，从源需要

Question

，例如，

> install.packages("jsonlite")
Installing package into ‘/Users/r2/Library/R/4.4’
(as ‘lib’ is unspecified)
trying URL 'https://packagemanager.posit.co/cran/latest/src/contrib/jsonlite_1.9.1.tar.gz'
Content type 'binary/octet-stream' length 1051291 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

* installing *source* package ‘jsonlite’ ...
** package ‘jsonlite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.6)’
using SDK: ‘’
clang -I"/opt/homebrew/Cellar/r/4.4.3_1/lib/R/include" -DNDEBUG -Iyajl/api  -I/opt/homebrew/opt/gettext/include -I/opt/homebrew/opt/readline/include -I/opt/homebrew/opt/xz/include -I/opt/homebrew/include     -fPIC  -g -O2  -c base64.c -o base64.o
clang -I"/opt/homebrew/Cellar/r/4.4.3_1/lib/R/include" -DNDEBUG -Iyajl/api  -I/opt/homebrew/opt/gettext/include -I/opt/homebrew/opt/readline/include -I/opt/homebrew/opt/xz/include -I/opt/homebrew/include     -fPIC  -g -O2  -c collapse_array.c -o collapse_array.o
...
clang -I"/opt/homebrew/Cellar/r/4.4.3_1/lib/R/include" -DNDEBUG -Iyajl/api  -I/opt/homebrew/opt/gettext/include -I/opt/homebrew/opt/readline/include -I/opt/homebrew/opt/xz/include -I/opt/homebrew/include     -fPIC  -g -O2  -c yajl/yajl_parser.c -o yajl/yajl_parser.o
clang -I"/opt/homebrew/Cellar/r/4.4.3_1/lib/R/include" -DNDEBUG -Iyajl/api  -I/opt/homebrew/opt/gettext/include -I/opt/homebrew/opt/readline/include -I/opt/homebrew/opt/xz/include -I/opt/homebrew/include     -fPIC  -g -O2  -c yajl/yajl_tree.c -o yajl/yajl_tree.o
ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/opt/homebrew/Cellar/r/4.4.3_1/lib/R/lib -L/opt/homebrew/opt/gettext/lib -L/opt/homebrew/opt/readline/lib -L/opt/homebrew/opt/xz/lib -L/opt/homebrew/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/homebrew/Cellar/r/4.4.3_1/lib/R/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation
ld: archive member '/' not a mach-o file in '/private/var/folders/3f/0hlmq7rx34ddjqtlc1lqbxl80000gn/T/RtmpuoriDi/R.INSTALLae611eb747f2/jsonlite/src/yajl/libstatyajl.a'
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [/opt/homebrew/Cellar/r/4.4.3_1/lib/R/share/make/shlib.mk:10: jsonlite.so] Error 1
ERROR: compilation failed for package ‘jsonlite’

that错误是通过Homebrew安装的R中的错误，但这也是“ R.App”的问题。几乎相同的输出，但是使用R的

/Library/Framework/...

路径包括标头等：

> install.packages("jsonlite", type='source')
Installing package into ‘/Users/r2/Library/R/4.4’
(as ‘lib’ is unspecified)
trying URL 'https://packagemanager.posit.co/cran/latest/src/contrib/jsonlite_1.9.1.tar.gz'
Content type 'binary/octet-stream' length 1051291 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

* installing *source* package ‘jsonlite’ ...
** package ‘jsonlite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.6)’
using SDK: ‘’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Iyajl/api  -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2  -c base64.c -o base64.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Iyajl/api  -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2  -c collapse_array.c -o collapse_array.o
...
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Iyajl/api  -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2  -c yajl/yajl_parser.c -o yajl/yajl_parser.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Iyajl/api  -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2  -c yajl/yajl_tree.c -o yajl/yajl_tree.o
ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: archive member '/' not a mach-o file in '/private/var/folders/3f/0hlmq7rx34ddjqtlc1lqbxl80000gn/T/RtmpVNvRR6/R.INSTALLb2f9120e3fb/jsonlite/src/yajl/libstatyajl.a'
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:10: jsonlite.so] Error 1
ERROR: compilation failed for package ‘jsonlite’

一些基本信息：

> R.version
               _                           
platform       aarch64-apple-darwin20      
arch           aarch64                     
os             darwin20                    
system         aarch64, darwin20           
status                                     
major          4                           
minor          4.2                         
year           2024                        
month          10                          
day            31                          
svn rev        87279                       
language       R                           
version.string R version 4.4.2 (2024-10-31)
nickname       Pile of Leaves              

Sys.which(c("gcc", "clang", "make"))
#                                          gcc 
#                               "/usr/bin/gcc" 
#                                        clang 
#                             "/usr/bin/clang" 
#                                         make 
# "/opt/homebrew/opt/make/libexec/gnubin/make"

非常相关的信息：

这是红杉15.3.2，我安装了Xcode 16.2（16c5032a）。

这与

jsonlite

本身无关，而是任何需要编译的软件包。 （Poitit的PM的二进制包装均正常工作。）

这也发生在

R --no-site --vanilla

中，因此这不是

.Rprofile

或其他站点文件的问题。

这种情况发生在其他软件包存储库中，例如来自
• https://cloud.r-project.org/src/contrib/jsonlite_1.9.1.tar.gz
，同样的错误。
我认为你是对的，这条线是有益的。 我看到
• using SDK: ‘’

  .

  diD您按照

  using SDK: ‘MacOSX15.1.sdk’

  上的说明安装工具？ 我看到的另一个区别是，您有
https://mac.r-project.org/tools/

• make

  ，而我的却是
homebrew

。 也许您在路径上的早期目录比

Answer 1

？ 我在路径上有

/usr/bin

，但它是在

/opt/homebrew/bin

，

/opt/R/arm64/bin

，苹果添加的一些垃圾之后，

/usr/local/bin

。