我已经安装了Anaconda,并且使用conda环境和conda命令来安装软件。
当我输入:
jupyter notebook --version
我收到以下错误:
zsh: /Users/cr517/.local/bin/jupyter: bad interpreter: /Users/cr517/anaconda/envs/snakes/bin/python: no such file or directory
5.2.1
我可以通过输入:
jupyter notebook xyz.ipynb
来打开jupyter笔记本,但我无法运行任何单元格。运行后,该单元格标记为 *
。很快,弹出框中出现了这条消息:
The kernel has died, and the automatic restart has failed. It is possible the kernel cannot be restarted. If you are not able to restart the kernel, you will still be able to save the notebook, but running code will no longer work until the notebook is reopened.
打开 Jupyter Notebook 后,我在终端中得到了这个:
zsh: /Users/cr517/.local/bin/jupyter: bad interpreter: /Users/cr517/anaconda/envs/snakes/bin/python: no such file or directory
[I 21:01:55.558 NotebookApp] JupyterLab alpha preview extension loaded from /Users/cr517/anaconda/lib/python3.6/site-packages/jupyterlab
[I 21:01:55.558 NotebookApp] JupyterLab application directory is /Users/cr517/anaconda/share/jupyter/lab
[I 21:01:55.564 NotebookApp] Serving notebooks from local directory: /Users/cr517/Documents/teach/demonstrations/python/python-functions-and-modules-master
[I 21:01:55.564 NotebookApp] 0 active kernels
[I 21:01:55.564 NotebookApp] The Jupyter Notebook is running at:
[I 21:01:55.564 NotebookApp] http://localhost:8888/?token=0a0b3368be051aceea02ddfdb677ba5b48724f050e78fa59
[I 21:01:55.564 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[C 21:01:55.584 NotebookApp]
Copy/paste this URL into your browser when you connect for the first time,
to login with a token:
http://localhost:8888/?token=0a0b3368be051aceea02ddfdb677ba5b48724f050e78fa59
[I 21:01:55.852 NotebookApp] Accepting one-time-token-authenticated connection from ::1
[I 21:01:57.808 NotebookApp] Kernel started: 944ec290-db3a-4dc1-97fb-cf440cc384ce
/Users/cr517/anaconda/bin/python: No module named ipykernel_launcher
[I 21:02:00.804 NotebookApp] KernelRestarter: restarting kernel (1/5)
/Users/cr517/anaconda/bin/python: No module named ipykernel_launcher
[I 21:02:03.813 NotebookApp] KernelRestarter: restarting kernel (2/5)
/Users/cr517/anaconda/bin/python: No module named ipykernel_launcher
[I 21:02:06.824 NotebookApp] KernelRestarter: restarting kernel (3/5)
/Users/cr517/anaconda/bin/python: No module named ipykernel_launcher
[W 21:02:07.940 NotebookApp] Timeout waiting for kernel_info reply from 944ec290-db3a-4dc1-97fb-cf440cc384ce
[I 21:02:09.833 NotebookApp] KernelRestarter: restarting kernel (4/5)
kernel 944ec290-db3a-4dc1-97fb-cf440cc384ce restarted
/Users/cr517/anaconda/bin/python: No module named ipykernel_launcher
[W 21:02:12.841 NotebookApp] KernelRestarter: restart failed
[W 21:02:12.842 NotebookApp] Kernel 944ec290-db3a-4dc1-97fb-cf440cc384ce died, removing from map.
kernel 944ec290-db3a-4dc1-97fb-cf440cc384ce restarted failed!
[W 21:02:12.873 NotebookApp] 410 DELETE /api/sessions/eaa457a0-7628-42c4-927f-1428b4ec3b68 (::1): Kernel deleted before session
[W 21:02:12.873 NotebookApp] Kernel deleted before session
[W 21:02:12.873 NotebookApp] 410 DELETE /api/sessions/eaa457a0-7628-42c4-927f-1428b4ec3b68 (::1) 2.10ms referer=http://localhost:8888/notebooks/python_fm_1.ipynb
确实没有
/Users/cr517/anaconda/envs/snakes/bin/python
,但为什么 Jupyter Notebook 试图使用它?我这里有一个运行良好的Python:
which python
/Users/cr517/anaconda/bin/python
?
which -a python
/Users/cr517/anaconda/bin/python
/usr/local/bin/python
/usr/bin/python
which -a jupyter
/Users/cr517/.local/bin/jupyter
/Users/cr517/.local/bin/jupyter
/Users/cr517/.local/bin/jupyter
echo $PATH
/usr/local/opt/[email protected]/bin:/Users/cr517/Documents/phd/project/output/software/DEXTRACTOR:/Users/cr517/Documents/phd/project/output/software/DAZZ_DB:/Users/cr517/Documents/phd/project/output/software/DASCRUBBER:/Users/cr517/Documents/phd/project/output/software/subread-1.5.2-MaxOSX-x86_64/bin:/Users/cr517/Documents/phd/project/output/software/SHRiMP_2_2_2/utils:/Users/cr517/Documents/phd/project/output/software:/Users/cr517/Documents/phd/project/output/software/fastx/bin:/Users/cr517/.local/bin:/Users/cr517/Documents/phd/project/output/software/DAZZ_DB:/Users/cr517/Documents/phd/project/output/software/DASCRUBBER:/Users/cr517/Documents/phd/project/output/software/subread-1.5.2-MaxOSX-x86_64/bin:/Users/cr517/Documents/phd/project/output/software/SHRiMP_2_2_2/utils:/Users/cr517/Documents/phd/project/output/software:/Users/cr517/Documents/phd/project/output/software/fastx/bin:/Users/cr517/.local/bin:/Users/cr517/Documents/phd/project/output/software/DASCRUBBER:/Users/cr517/Documents/phd/project/output/software/subread-1.5.2-MaxOSX-x86_64/bin:/Users/cr517/Documents/phd/project/output/software/SHRiMP_2_2_2/utils:/Users/cr517/Documents/phd/project/output/software:/Users/cr517/Documents/phd/project/output/software/fastx/bin:/Users/cr517/.local/bin:/Users/cr517/Documents/phd/project/output/software/subread-1.5.2-MaxOSX-x86_64/bin:/Users/cr517/Documents/phd/project/output/software/SHRiMP_2_2_2/utils:/Users/cr517/Documents/phd/project/output/software:/Users/cr517/Documents/phd/project/output/software/fastx/bin:/Users/cr517/.local/bin:/Users/cr517/Documents/phd/project/output/software:/Users/cr517/Documents/phd/project/output/software/STAR:/Users/cr517/Documents/phd/project/output/software/fastx/bin:/Users/cr517/.local/bin:/Users/cr517/.local/bin:/Users/cr517/anaconda/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/usr/local/ncbi/blast/bin:/Library/TeX/texbin:/Users/cr517/Documents/phd/project/multibreak-sv/lib:/Users/cr517/Documents/phd/project/output/software/PBSuite_15.8.24/pbsuite:/Users/cr517/Documents/phd/project/output/software/PBSuite_15.8.24/bin/:/Users/cr517/Documents/phd/project/output/software/blobology
/Users/cr517/.local/bin/jupyter
/Users/cr517/.local/bin/jupyter
/Users/cr517/.local/bin/jupyter
/Users/cr517/anaconda/bin/jupyter
/usr/local/bin/jupyter
jupyter kernelspec list
zsh: /Users/cr517/.local/bin/jupyter: bad interpreter: /Users/cr517/anaconda/envs/snakes/bin/python: no such file or directory
Available kernels:
python3 /Users/cr517/anaconda/lib/python3.6/site-packages/ipykernel/resources
ir /Users/cr517/anaconda/share/jupyter/kernels/ir
python2 /usr/local/share/jupyter/kernels/python2
jupyter notebook
在网络浏览器中打开我的目录,但不会创建新笔记本。
我在终端中输入
python --version
并得到:
Python 3.6.3 :: Anaconda custom (x86_64)
从您的终端,您可以简单地执行以下操作:
jupyter --version
或者,如果您使用笔记本,则执行以下操作:
!jupyter --version
这是我的案例的输出:
jupyter core : 4.5.0
jupyter-notebook : 5.2.2
qtconsole : 4.5.2
ipython : 5.5.0
ipykernel : 4.10.1
jupyter client : 5.3.1
jupyter lab : not installed
nbconvert : 5.5.0
ipywidgets : 7.5.0
nbformat : 4.4.0
traitlets : 4.3.2
/Users/cr517/anaconda/bin/python
/Users/cr517/.local/bin/jupyter
但它应该指向 /Users/cr517/anaconda/bin/jupyter
gedit /Users/cr517/anaconda/bin/jupyter
/Users/cr517/anaconda/bin/jupyter
,那么就让它 /Users/cr517/anaconda/bin/jupyter
ls *jupyter*
其中许多文件都有硬编码路径,这可能是错误的,这可能是您能够打开 ipynb 但无法创建单元的原因bash Anaconda....sh -b -p "Users/cr517/anaconda"