从 rgbif 事件下载中获取所有属性

Question

我已使用

rgbif

包成功下载了发生数据。然而，可用的属性似乎受到限制。具体来说，我想要：栖息地、识别备注和发生备注。有没有办法通过 R 获取该信息？

library(rgbif)
# Request data 
occ_download(pred_and(pred("phylumKey", 35), pred("gadm","ETH")),
             format = "SIMPLE_CSV")

# Check download status using occurrence number,
# see result in console from previous step
occ_download_wait("download occurrence number")

# Load data
df <- occ_download_get("download occurrence number") %>%
  occ_download_import()

探索数据：没有栖息地等属性

names(df)
 [1] "gbifID"                           "datasetKey"                       "occurrenceID"                     "kingdom"                         
 [5] "phylum"                           "class"                            "order"                            "family"                          
 [9] "genus"                            "species"                          "infraspecificEpithet"             "taxonRank"                       
[13] "scientificName"                   "verbatimScientificName"           "verbatimScientificNameAuthorship" "countryCode"                     
[17] "locality"                         "stateProvince"                    "occurrenceStatus"                 "individualCount"                 
[21] "publishingOrgKey"                 "decimalLatitude"                  "decimalLongitude"                 "coordinateUncertaintyInMeters"   
[25] "coordinatePrecision"              "elevation"                        "elevationAccuracy"                "depth"                           
[29] "depthAccuracy"                    "eventDate"                        "day"                              "month"                           
[33] "year"                             "taxonKey"                         "speciesKey"                       "basisOfRecord"                   
[37] "institutionCode"                  "collectionCode"                   "catalogNumber"                    "recordNumber"                    
[41] "identifiedBy"                     "dateIdentified"                   "license"                          "rightsHolder"                    
[45] "recordedBy"                       "typeStatus"                       "establishmentMeans"               "lastInterpreted"                 
[49] "mediaType"                        "issue"     

Answer 1

感谢@Grzegorz Sapijaszko 的评论，我能够解决这个问题。我请求使用

SIMPLE_CSV

作为下载的文件格式（就像我遵循的许多教程一样）。然而，

SIMPLE_CSV

可用的属性数量是有限的。要获取所有可用数据，请使用

DWCA

作为下载方法。这会将数据下载到一个文件夹中的多个单独的文本文件中。 这是更新后的代码（也是一个简单的调整，通过将下载数量保存到

res

对象中，并将门更改为物种较少的门，以加快示例速度，从而使其更容易重现）。

library(rgbif)
# Request data 
res<-occ_download(pred_and(pred("phylumKey", 13), pred("gadm","ETH")),
             format = "DWCA")#!!!! change SIMPLE_CSV to DWCA

# Check download status using occurrence number,
# see result in console from previous step
occ_download_wait(res)

# Load data
df <- occ_download_get(res) %>%
  occ_download_import()