我有一个运行良好的函数，我想通过删除其中一列并使用以下命令将另一列中的NA值转换为1来清理输出：
df$PlateIden <- NULL
df$PlateNum[is.na(df$PlateNum)] <- 1
当我在函数外部直接在数据框架上使用它们时，这些工作正常，但是当我在函数中使用它们时，如果使用任一函数，我的数据帧将变为“空”或“1”的值。
这是我的全部功能：
cleanup_safe <- function(df,addproject,adduser){
colnames(df) <- "FileName"
df$RunDate <- str_match(df$FileName, "^[a-zA-Z ]*(\\d+)")[,2]
df$RunDate <- ymd(df$RunDate)
df$PlateNum <- str_match(df$FileName, "(?<=Plate|plate)[_ ]?(\\d)")[,2]
df$PlateIden <- str_match(df$FileName, "(?<=Plate|plate)[_ ]?\\d*[_ ]?([a-zA-Z])")[,2]
df$User <- "adduser"
df$Project <- "addproject"
df <- df[!duplicated(df[,c("User","Project","RunDate","PlateNum")]),]
df <- within(df, ID <- cumsum(!duplicated(df[c("User","Project","RunDate")])))
df$PlateIden <- NULL
df$PlateNum[is.na(df$PlateNum)] <- 1
}
这是一个测试数据集
test <- c("20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1a, IgG-Biot, MAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1a, IgG-Biot, SAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1a, IgG-Biot.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1b, IgG-Biot, MAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1b, IgG-Biot, SAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1b, IgG-Biot.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 2, IgG-Biot, MAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 2, IgG-Biot, SAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 2, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1a, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1a, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1b, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1b, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1b, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2a, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2a, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2a, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2b, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2b, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2b, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3a, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3a, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3a, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3b, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3b, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3b, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4a, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4a, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4a, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4b, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4b, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4b, IgG-Biot.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot, MAF.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot, SAF.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot, MAF.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot, SAF.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot, MAF.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot, SAF.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot, MAF.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot, SAF.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot.srbx")
dataframe <- as.data.frame(test)
dataframe <- cleanup_safe(dataframe,testproject,testuser)
用df$PlateNum[is.na(df$PlateNum)] <- 1替换
setDT(df)
df[is.na(PlateNum), PlateNum := 1].
所以，你的整个过程就像：
使用data.table
library(data.table)
test <- c("20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1a, IgG-Biot, MAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1a, IgG-Biot, SAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1a, IgG-Biot.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1b, IgG-Biot, MAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1b, IgG-Biot, SAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1b, IgG-Biot.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 2, IgG-Biot, MAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 2, IgG-Biot, SAF.srbx",
"20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 2, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1a, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1a, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1b, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1b, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1b, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2a, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2a, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2a, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2b, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2b, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2b, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3a, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3a, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3a, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3b, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3b, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3b, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4a, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4a, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4a, IgG-Biot.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4b, IgG-Biot, MAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4b, IgG-Biot, SAF.srbx",
"20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4b, IgG-Biot.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot, MAF.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot, SAF.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot, MAF.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot, SAF.srbx",
"20160812, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot, MAF.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot, SAF.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot, MAF.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot, SAF.srbx",
"20160812_a, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot.srbx")
dataframe <- as.data.frame(test)
cleanup_safe <- function(df,addproject,adduser){
colnames(df) <- "FileName"
df$RunDate <- str_match(df$FileName, "^[a-zA-Z ]*(\\d+)")[,2]
df$RunDate <- ymd(df$RunDate)
df$PlateNum <- str_match(df$FileName, "(?<=Plate|plate)[_ ]?(\\d)")[,2]
df$PlateIden <- str_match(df$FileName, "(?<=Plate|plate)[_ ]?\\d*[_ ]?([a-zA-Z])")[,2]
df$User <- "adduser"
df$Project <- "addproject"
df <- df[!duplicated(df[,c("User","Project","RunDate","PlateNum")]),]
df <- within(df, ID <- cumsum(!duplicated(df[c("User","Project","RunDate")])))
df <- df[, !(names(df) %in% "PlateIden"), drop = F]
setDT(df)
df[is.na(PlateNum), PlateNum := 1]
}
dataframe <- cleanup_safe(dataframe,testproject,testuser)
这会给你一个输出： -
FileName RunDate PlateNum User Project ID
1: 20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 1a, IgG-Biot, MAF.srbx 2016-08-01 1 adduser addproject 1
2: 20160801, Optimization, gp70_B.CaseA_V1_V2 Coupling Testing, Plate 2, IgG-Biot, MAF.srbx 2016-08-01 2 adduser addproject 1
3: 20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 1a, IgG-Biot, MAF.srbx 2016-08-02 1 adduser addproject 2
4: 20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 2a, IgG-Biot, MAF.srbx 2016-08-02 2 adduser addproject 2
5: 20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 3a, IgG-Biot, MAF.srbx 2016-08-02 3 adduser addproject 2
6: 20160802, Optimization, New lot of gp70_B.CaseA_V1_V2 Testing, Plate 4a, IgG-Biot, MAF.srbx 2016-08-02 4 adduser addproject 2
7: 20160812, Optimization, Testing New lot of NGS, Plate 1, IgG-Biot, MAF.srbx 2016-08-12 1 adduser addproject 3
8: 20160812, Optimization, Testing New lot of NGS, Plate 2, IgG-Biot, MAF.srbx 2016-08-12 2 adduser addproject 3