snakemake：将文件复制到多个文件夹

Question

我是蛇制作新手。我有一条规则可以将文件复制到多个文件夹。文件夹是用python制作的。关于多个目标，我一定会误会。使用“ Snakemake practice_phased_reversed.vcf”运行时，以下代码返回“没有规则可以产生Practice_phased_reversed.vcf”

s=['k_1','k2_10']
fullfs = []
import os
cdir = os.getcwd()
for f in fs:
        path = os.path.join(cdir,f)
        fullfs.append(path)
        try:
                os.mkdir(path)
        except:
                pass
rule r1:
        input:
                "{basename}_phased_reversed.vcf"
        output:
                expand("{f}/{{basename}}_phased_reversed.vcf",f=fullfs)
        shell:
               "cp {input} {output}"

Answer 1

感谢Maarten-vd-Sande。现在，这可以使用“ snakemake”运行，即无需传递目标文件名。

dirs=['k_1','k2_10']
rule all:
        input:
                expand("{f}/practice_phased_reversed.vcf",f=dirs)
rule r1:
        input:
                "practice_phased_reversed.vcf"
        output:
                "{f}/practice_phased_reversed.vcf"
        shell:
               "cp {input} {output}"

但是我仍然缺少一些东西。我需要能够使用目标（即“ snakemake practice_phased_reversed.vcf”）进行调用。感谢您的帮助。