我是生物信息学新手,我正在尝试从 yaml 文件创建一个环境,但是我不断收到以下长错误消息,我不确定如何修复它。
解决时遇到的问题:
我使用了以下命令:
mamba env create -n iphop -f iphop.yaml
yaml 文件的文本如下。任何帮助将不胜感激!
name: iphop
channels:
- bioconda
- conda-forge
- biocore
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- _tflow_select=2.3.0=eigen
- absl-py=0.13.0=pyhd8ed1ab_0
- aiohttp=3.7.4.post0=py37h5e8e339_0
- alsa-lib=1.2.3=h516909a_0
- astor=0.8.1=pyh9f0ad1d_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=3.0.1=py_1000
- attrs=21.2.0=pyhd8ed1ab_0
- binutils_impl_linux-64=2.35.1=h27ae35d_9
- binutils_linux-64=2.35.1=h454624a_30
- biopython=1.79=py37h5e8e339_0
- blast=2.12.0=pl5262h3289130_0
- blinker=1.4=py_1
- boost-cpp=1.74.0=h312852a_4
- brotlipy=0.7.0=py37h5e8e339_1001
- bwidget=1.9.14=ha770c72_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.2=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cachetools=4.2.2=pyhd8ed1ab_0
- cairo=1.16.0=h6cf1ce9_1008
- certifi=2021.10.8=py37h89c1867_2
- cffi=1.14.6=py37hc58025e_0
- chardet=4.0.0=py37h89c1867_1
- click=8.0.1=py37h89c1867_0
- crisper_recognition_tool=1.2=hdfd78af_2
- cryptography=3.4.7=py37h5d9358c_0
- curl=7.78.0=hea6ffbf_0
- dataclasses=0.8=pyhc8e2a94_3
- diamond=2.0.11=hdcc8f71_0
- entrez-direct=13.9=pl5262he881be0_2
- expat=2.4.1=h9c3ff4c_0
- fasttree=2.1.10=h779adbc_5
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=hba837de_1005
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gast=0.3.3=py_0
- gcc_impl_linux-64=9.3.0=h6df7d76_17
- gcc_linux-64=9.3.0=h1ee779e_30
- gettext=0.19.8.1=h0b5b191_1005
- gfortran_impl_linux-64=9.3.0=h5abd6ed_17
- gfortran_linux-64=9.3.0=hf47db2c_30
- giflib=5.2.1=h36c2ea0_2
- git-lfs=3.1.4=ha770c72_0
- google-auth=1.35.0=pyh6c4a22f_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- google-pasta=0.2.0=pyh8c360ce_0
- graphite2=1.3.13=h58526e2_1001
- grpcio=1.38.1=py37hb27c1af_0
- gsl=2.6=he838d99_2
- gxx_impl_linux-64=9.3.0=hbdd7822_17
- gxx_linux-64=9.3.0=h7e70986_30
- h5py=2.10.0=nompi_py37ha3df211_106
- harfbuzz=2.9.0=h83ec7ef_0
- hdf5=1.10.6=nompi_h6a2412b_1114
- hmmer=3.3.2=h1b792b2_1
- icu=68.1=h58526e2_0
- idna=2.10=pyh9f0ad1d_0
- importlib-metadata=4.8.1=py37h89c1867_0
- jbig=2.1=h7f98852_2003
- joblib=1.0.1=pyhd8ed1ab_0
- jpeg=9d=h36c2ea0_0
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_14
- krb5=1.19.2=hcc1bbae_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.35.1=h7274673_9
- lerc=2.2.1=h9c3ff4c_0
- libblas=3.9.0=11_linux64_openblas
- libcblas=3.9.0=11_linux64_openblas
- libcurl=7.78.0=h2574ce0_0
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=9.3.0=hb95220a_17
- libgcc-ng=11.1.0=hc902ee8_8
- libgfortran-ng=9.3.0=ha5ec8a7_17
- libgfortran5=9.3.0=ha5ec8a7_17
- libglib=2.68.4=h3e27bee_0
- libgomp=11.1.0=hc902ee8_8
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=11_linux64_openblas
- libnghttp2=1.43.0=h812cca2_0
- libopenblas=0.3.17=pthreads_h8fe5266_1
- libpng=1.6.37=h21135ba_2
- libprotobuf=3.17.2=h780b84a_1
- libssh2=1.10.0=ha56f1ee_0
- libstdcxx-devel_linux-64=9.3.0=hf0c5c8d_17
- libstdcxx-ng=11.1.0=h56837e0_8
- libtiff=4.3.0=hf544144_1
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.1=h7f98852_0
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.12=h72842e0_0
- lz4-c=1.9.3=h9c3ff4c_1
- make=4.3=hd18ef5c_1
- markdown=3.3.4=pyhd8ed1ab_0
- multidict=5.1.0=py37h5e8e339_1
- ncurses=6.2=h58526e2_4
- numpy=1.21.2=py37h31617e3_0
- oauthlib=3.1.1=pyhd8ed1ab_0
- openjdk=11.0.9.1=h5cc2fde_1
- openssl=1.1.1o=h166bdaf_0
- opt_einsum=3.3.0=pyhd8ed1ab_1
- pandas=1.3.2=py37he8f5f7f_0
- pango=1.48.9=hb8ff022_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=h032f7d1_0
- perl=5.26.2=h36c2ea0_1008
- perl-app-cpanminus=1.7044=pl526_1
- perl-archive-tar=2.32=pl526_0
- perl-base=2.23=pl526_1
- perl-bioperl=1.6.924=4
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-digest-hmac=1.03=pl526_3
- perl-digest-md5=2.55=pl526_0
- perl-encode=2.88=pl526_1
- perl-encode-locale=1.05=pl526_6
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-listing=6.04=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-html-parser=3.72=pl526h6bb024c_5
- perl-html-tagset=3.20=pl526_3
- perl-html-tree=5.07=pl526_1
- perl-http-cookies=6.04=pl526_0
- perl-http-daemon=6.01=pl526_1
- perl-http-date=6.02=pl526_3
- perl-http-message=6.18=pl526_0
- perl-http-negotiate=6.01=pl526_3
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-html=1.001=pl526_2
- perl-io-socket-ssl=2.066=pl526_0
- perl-io-zlib=1.10=pl526_2
- perl-json=4.02=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-libwww-perl=6.39=pl526_0
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-lwp-mediatypes=6.04=pl526_0
- perl-lwp-protocol-https=6.07=pl526_4
- perl-mime-base64=3.15=pl526_1
- perl-mozilla-ca=20180117=pl526_1
- perl-net-http=6.19=pl526_0
- perl-net-ssleay=1.88=pl526h90d6eec_0
- perl-ntlm=1.09=pl526_4
- perl-parent=0.236=pl526_1
- perl-pathtools=3.75=pl526h14c3975_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-socket=2.027=pl526_1
- perl-storable=3.15=pl526h14c3975_0
- perl-test-requiresinternet=0.05=pl526_0
- perl-threaded=5.26.0=0
- perl-time-local=1.28=pl526_1
- perl-try-tiny=0.30=pl526_1
- perl-types-serialiser=1.0=pl526_2
- perl-uri=1.76=pl526_0
- perl-www-robotrules=6.02=pl526_3
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-parser=2.44=4
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xml-sax-expat=0.51=pl526_3
- perl-xml-simple=2.25=pl526_1
- perl-xsloader=0.24=pl526_0
- perl-yaml=1.29=pl526_0
- piler-cr=1.06=h7d875b9_1
- pip=21.2.4=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- prodigal=2.6.3=h779adbc_3
- protobuf=3.17.2=py37hcd2ae1e_0
- pthread-stubs=0.4=h36c2ea0_1001
- pyasn1=0.4.8=py_0
- pycparser=2.20=pyh9f0ad1d_2
- pyjwt=2.1.0=pyhd8ed1ab_0
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pysocks=1.7.1=py37h89c1867_3
- python=3.7.10=hffdb5ce_100_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.7=2_cp37m
- pytz=2021.1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- r-base=4.0.5=hb67fd72_2
- r-lattice=0.20_44=r40hcfec24a_0
- r-matrix=1.3_4=r40he454529_0
- r-ranger=0.13.1=r40h03ef668_0
- r-rcpp=1.0.7=r40h03ef668_0
- r-rcppeigen=0.3.3.9.1=r40h306847c_0
- readline=8.1=h46c0cb4_0
- requests=2.25.1=pyhd3deb0d_0
- requests-oauthlib=1.3.0=pyh9f0ad1d_0
- rsa=4.7.2=pyh44b312d_0
- scikit-learn=0.22=py37hcdab131_1
- scipy=1.6.3=py37h29e03ee_0
- sed=4.8=he412f7d_0
- setuptools=57.4.0=py37h89c1867_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.36.0=h9cd32fc_0
- sysroot_linux-64=2.12=he073ed8_14
- tensorboard=2.6.0=pyhd8ed1ab_1
- tensorboard-data-server=0.6.0=py37hf1a17b8_0
- tensorboard-plugin-wit=1.8.0=pyh44b312d_0
- termcolor=1.1.0=py_2
- threadpoolctl=3.0.0=pyh8a188c0_0
- tk=8.6.11=h27826a3_1
- tktable=2.10=hb7b940f_3
- typing-extensions=3.10.0.0=hd8ed1ab_0
- typing_extensions=3.10.0.0=pyha770c72_0
- urllib3=1.26.6=pyhd8ed1ab_0
- werkzeug=2.0.1=pyhd8ed1ab_0
- wrapt=1.12.1=py37h5e8e339_3
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yarl=1.6.3=py37h5e8e339_2
- zipp=3.5.0=pyhd8ed1ab_0
- zlib=1.2.11=h516909a_1010
- zstd=1.5.0=ha95c52a_0
- pip:
- flatbuffers==2.0
- keras==2.7.0
- libclang==12.0.0
- pyasn1-modules==0.2.8
- tensorflow==2.7.0
- tensorflow-decision-forests==0.2.2
- tensorflow-estimator==2.7.0
- tensorflow-io-gcs-filesystem==0.22.0
- wheel==0.37.1
- wurlitzer==3.0.2
prefix: /global/cfs/cdirs/pkmeco/virus/.conda/envs/iphop
我只是猜测:
被严格的回购优先级排除
表明您的 conda 配置方式是排除某些渠道的软件包。查看
conda config --show
的输出。如果条目 channel_priority:
是 strict
,请尝试将其设置为 flexible
。
另一个选项可能是编辑 yaml 文件以获得确切的包版本,但不包含包构建。例如。用途:
- absl-py=0.13.0
而不是:
- absl-py=0.13.0=pyhd8ed1ab_0
通过这种方式,您可以为求解器提供更大的灵活性,但您仍然可以获得原始环境的确切包版本。
这对我有用:
conda config --set channel_priority disabled
它正在工作。我爱你......!